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PDB Components Method Source Download
Structure of YaeJ bound to the Thermus thermophilus 70S ribosome. X-Ray Gagnon MG, Seetharaman SV, Bulkley D, Steitz TA. Structural basis for the rescue of stalled ribosomes: structure of YaeJ bound to the ribosome. Science 335 pp. 1370 (2012) 4DH9.pdb
Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the Thermus thermophilus 70S ribosome. X-Ray Neubauer C, Gillet R, Kelley AC, Ramakrishnan V. Decoding in the absence of a codon by tmRNA and SmpB in the ribosome. Science 335 pp. 1366 (2012) 4ABR.pdb
E. coli modified tmRNA bound to 70S ribosome. Cryo-EM Fu J, Hashem Y, Wower I, Lei J, Liao HY, Zwieb C, Wower J, Frank J. Visualizing the transfer-messenger RNA as the ribosome resumes translation. EMBO J 29 pp. 3819 (2010) 3IZ4.pdb
Cryo-EM of Thermus thermophilus ribosome-bound SmpB, with and without ribosomal protein S1. Cryo-EM Gillet R, Kaur S, Li W, Hallier M, Felden B, Frank J. Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1. J Biol Chem. 282 pp. 6356 (2007) 2OB7.pdb
Crystal structure of the tRNA-like domain of tmRNA from Thermus thermophilus HB8 bound to SmpB X-Ray Bessho Y, Shibata R, Sekine S, Murayama K, Higashijima K, Hori-Takemoto C, Shirouzu M, Kuramitsu S, Yokoyama S. Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA. Proc Natl Acad Sci U S A. 104 pp. 8293 (2007) 2CZJ.pdb
Catalytic fragment of Alanyl-tRNA Synthetase In Complex with L-Serine X-Ray Swairjo, M. A., Schimmel, P. R. Breaking Sieve for Steric Exclusion of a Noncognate Amino Acid from Active Site of a tRNA Synthetase. Proc.Natl.Acad.Sci.USA 102 pp. 988 (2005) 1YGB.pdb
tmRNA, SmpB, EF-Tu and h44 fitted into the 70S ribosome of T. thermophilus Cryo-EM Valle, M., Gillet, R., Kaur, S., Henne, A., Ramakrishnan, V., Frank, J. Visualizing Tmrna Entry Into a Stalled Ribosome Science 300 pp. 127 (2003) 1ZC8.pdb
SmpB of Aquifex aeolicus with TLD of tmRNA X-Ray Gutmann, S., Haebel, P. W., Metzinger, L., Sutter, M., Felden, B., Ban, N. Crystal Structure of the Transfer-RNA Domain of Transfer-Messenger RNA in Complex with Smpb Nature 424 pp. 699 (2003) 1P6V.pdb
SmpB of Thermus thermophilus NMR Someya, T., Nameki, N., Hosoi, H., Suzuki, S., Hatanaka, H., Fujii, M., Terada, T., Shirouzu, M., Inoue, Y., Shibata, T., Kuramitsu, S., Yokoyama, S., Kawai, G. Solution Structure of a Tmrna-Binding Protein, Smpb, from T. thermophilus FEBS Lett. 535 pp. 94 (2003) 1J1H.pdb
SmpB of Aquifex aeolicus NMR Dong, G., Nowakowski, J., Hoffman, D. W.: Structure of Small Protein B The Protein Component of the Tmrna-Smpb System for Ribosome Rescue Embo J. 21 pp. 1845 (2002) 1K8H.pdb
Thermus thermophilus Ef-Tu in Complex with the GTP Analogue Gppnhp X-Ray Hilgenfeld, R., Mesters, J. R., Hogg, T.: Insights Into the GTPase Mechanism of EF-TU from Structural Studies The Ribosome: Structure, Function, Antibiotics, and Cellular Interactions 28 pp. 347 (2000) 1EXM.pdb
Ternary Complex of E. coli Cysteinyl-tRNA, Thermus aquaticus EF-Tu, and GTP X-Ray Nissen, P., Thirup, S., Kjeldgaard, M., Nyborg, J. The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA Structure Fold Des 7 pp. 143 (1999) 1B23.pdb
Protein S1 RNA-binding domain of E. coli NMR Bycroft, M., Hubbard, T. J., Proctor, M., Freund, S. M., Murzin, A. G. The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold Cell 88 pp. 235 (1997) 1SRO.pdb
Ternary Complex of yeast Phe-tRNA, Thermus aquaticus EF-Tu, and GDPNP X-Ray Halic, M. Becker, T. Pool, M.R. Spahn, C.M. Grassucci, R.A. Frank, J. Beckmann, R. Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G., Reshetnikova, L., Clark, B. F., Nyborg, J. Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog Science 270 pp. 1464 (1995) 1TTT.pdb

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