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tmRNAs in phylogenetic order (555 sequences)

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Group ID Species Name Accessions
Bacteriophages MYCO.SPEC.PH.BXZ1. Mycobacteriophage bxz1 NC_004867
BACI.SPEC.PH.G. Bacteriophage G of Bacillus GSP
BACT.SPEC.PH.CP1639. Bacteriophage CP1639 AJ304858
Aquificae AQUI.AEOL. Aquifex aeolicus AE000657 AE000749
SULF.AZOR. Sulfurihydrogenibium azorense Az-Ful GSP
Deinococcus-Thermus THER.THER. Thermus thermophilus Y15063
UNCU.HUM3. Uncultured bacterium human3 AI752555
DEIN.RADI. Deinococcus radiodurans GSP
Thermodesulfobacteria THER.COMM. Thermodesulfobacterium commune strain DSM 2178 GSP
Thermotogae THER.NEAP. Thermotoga neapolitana strain DSM 4359 GSP
THER.MARI. Thermotoga maritima AE001726 AE001727 GSP
Planctomyctes GEMM.OBSC. Gemmata obscuriglobus strain UQM2246 GSP
RHOD.BALT. Rhodopirellula baltica BX294141
Chlamydiae/Verrucomicrobia CHLA.PSIT. Chlamydophila psittaci GSP
CHLA.PNEU. Chlamydophila pneumoniae AE001597
CHLA.ABOR. Chlamydophila abortus GSP
CHLA.TRAC. Chlamydia trachomatis AE001276 AE001277
CHLA.MURI. Chlamydia muridarum AE002296
PARA.UWE2. Parachlamydia UWE25 (host: Acanthamoeba sp.) BX908798
VERR.SPIN. Verrucomicrobium spinosum DSM4136 GSP
Chloroflexi THER.ROSE. Thermomicrobium roseum strain DSM 5159 GSP
CHLO.AURA. Chloroflexus aurantiacus AY040836
DEHA.ETHE. Dehalococcoides ethenogenes strain 195 GSP
Bacteroides/Chlorobi PORP.GING. Porphyromonas gingivalis GSP
CHLO.TEPI. Chlorobium tepidum GSP
BACT.FORS. Bacteroides forsythus strain ATCC 43037 GSP
UNCU.ANO1.PA. Uncultured bacterium anopheles1 BH400891
BACT.THET. Bacteroides thetaiotaomicron AE16945
BACT.FRAG. Bacteroides fragilis GSP
PREV.INTE. Prevotella intermedia strain 17 GSP
PREV.RUMI. Prevotella ruminicola strain 23 GSP
CYTO.HUTC. Cytophaga hutchinsonii GSP
UNCU.FAR6.PA. Uncultured bacterium farm6 AAFX01065096
SALI.RUBE. Salinibacter ruber strain DSMZ 13855 GSP
CHLO.AGGR. Chlorochromatium aggregatus GSP
Cyanobacteria OSCI.SPEC. Oscillatoria species PCC6304 AY082651
OSCI.SANC. Oscillatoria sancta AY911518
ANAB.SPEC. Anabaena sp. PCC7120 M21659
ANAB.VARI. Anabaena variabilis GSP
CHRO.SPEC. Chroococcidiopsis species PCC6712 AY082650
NOST.PUNC. Nostoc punctiforme GSP
FREM.DIPL. Fremyella diplosiphon AY082653
PLEC.BORY. Plectonema boryanum AY082652
TRIC.ERYT. Trichodesmium erythraeum GSP
SYNE.SPEC.-1. Synechocystis sp. PCC6803 D90916
SYNE.SPEC.-2. Synechococcus sp. PCC6301 AB003477
CROC.WATS. Crocosphaera watsonii GSP
THER.ELON. Thermosynechococcus elongatus AP005369
CYAN.GRAC. Cyanobium gracile AF251551
SYNE.SPEC.-7. Synechococcus species CC9311 GSP
SYNE.SPEC.-3. Synechococcus sp. PCC6307 AF251551
SYNE.SPEC.-4. Synechococcus sp. WH8102 BX548020
PROC.MARI.-2. Prochlorococcus marinus MIT9313 BX548175
PROC.MARI.-3. Prochlorococcus marinus strain SS120 AE017161
PROC.MARI.-1. Prochlorococcus marinus MED4 BX548174
SYNE.SPEC.-5. Synechococcus sp. PCC7009 AY082654
SYNE.SPEC.-6. Synechococcus sp. PCC6904 AY082655
GLOE.VIOL. Gloeobacter violaceus AP006575
Organelles/Chloroplasts CYAN.PARA.CY. Cyanophora paradoxa cyanelle U30821
PAVL.LUTH.CL.PA. Pavlova lutheri chloroplast (partial sequence) X65961
BOLI.PACI.CL. Bolidomonas pacifica chloroplast AF169626
GUIL.THET.CL. Guillardia theta chloroplast AF041468
THAL.WEIS.CL. Thalassiosira weissflogii chloroplast AF049491
SKEL.COST.CL. Skeletonema costatum chloroplast AF550357
PYLA.LITT.CL. Pylaiella littoralis chloroplast AF169625
GRAC.TENU.CL. Gracilaria tenuistipitata var. liui chloroplast AY673996
PORP.PURP.CL. Porphyra purpurea chloroplast U38804
CYAN.CALD.CL. Cyanidium caldarium chloroplast AF022186
ODON.SINE.CL. Odontella sinensis chloroplast Z67753
AMPH.COFF.CL. Amphora coffaeformis chloroplast AF550350
THAL.PSEU.CL. Thalassiosira pseudonana chloroplast AAFD01001440
FRAG.PINN.CL. Fragilaria pinnata chloroplast AF550351
EMIL.HUXL.CL. Emiliania huxleyi chloroplast GSP
PRYM.PARV.CL. Prymnesium parvum chloroplast AF550354
RHOD.MARI.CL. Rhodosorus marinus chloroplast AF550356
GIGA.PAPI.CL. Gigartina papillata chloroplast AF550352
PRIO.LANC.CL. Prionitis lanceolata chloroplast AF550353
CYAN.MERO.CL. Cyanidioschyzon merolae chloroplast AB002583
RHOD.SALI.CL. Rhodomonas salina chloroplast AF550355
NEPH.OLIV.CL. Nephroselmis olivacea AF137379
MESO.VIRI.CL. Mesostigma viride chloroplast [Note!] AF166114
Organelles/Mitochondria RECL.AMER.MT.-1. Reclinomonas americana mitochondrium AF007261
RECL.AMER.MT.-2. Reclinomonas americana mitochondrium tmRNA website
RECL.AMER.MT.-3. Reclinomonas americana mitochondrium tmRNA website
SECU.ECUA.MT. Seculamonas ecuadoriensis mitochondrion tmRNA website
HIST.AROI.MT. Histiona aroides mitochondrion tmRNA website
JAKO.LIBE.MT. Jakoba libera mitochondrium tmRNA website
Fibrobacteres/Acidobacteria UNCU.FAR2. Uncultured bacterium farm2 AAFX01031538
ACID.SPEC. Acidobacterium Ellin6076 GSP
FIBR.SUCC. Fibrobacter succinogenes strain S85 GSP
ACID.CAPS. Acidobacterium capsulatum strain ATCC 51196 GSP
Spirochaetes BORR.GARI. Borrelia garinii Pbi CP000013
BORR.BURG. Borrelia burgdorferi AE001118
TREP.DENT. Treponema denticola GSP
TREP.PALL. Treponema pallidum GSP
LEPT.INTE. Leptospira interrogans AE011207
Nitrospirae LEPT.GRII. Leptospirillum species group II AADL01000021
LEPT.GIII. Leptospirillum species group III AADL01000160
LEPT.FERR.PA. Leptospirillum ferrooxidans AY204390
Alphaproteobacteria RHOD.PALU. Rhodopseudomonas palustris BX571963
MAGN.MAGN.-1. Magnetospirillum magnetotacticum strain MS-1 GSP
MAGN.MAGN.-2. Magnetospirillum magnetotacticum strain MS-1 GSP
ALPH.SAR1. Alphaproteobacteria SAR-1 AACY01003734
UNCU.WHA3. Uncultured whale3 AAFZ01019330
MAGN.MC-1. Magnetococcus MC-1 GSP
RHOD.RUBR. Rhodospirillum rubrum GSP
GLUC.OXYD. Gluconobacter oxydans 621H CP000009
METH.EXTO. Methylobacterium extorquens tmRNA website
NITR.WINO. Nitrobacter winogradskyi GSP
UNCU.FAR1. Uncultured bacterium farm1 AAFX01020036
BRAD.JAPO. Bradyrhizobium japonicum M73823
MESO.LOTI. Mesorhizobium loti AP002997
AGRO.TUME.-1 Agrobacterium tumefaciens strain C58 AE008121
AGRO.TUME.-2. Agrobacterium tumefaciens NTL4 tmRNA Website
AGRO.VITI. Agrobacterium vitis S4 tmRNA Website
BRUC.MELI. Brucella melitensis 16M AE009503
SINO.MELI. Sinorhizobium meliloti strain 2011 M73824
RHIZ.LEGU. Rhizobium leguminosarum bv. viciae 3841 GSP
UNCU.WHA6. Uncultured bacterium whale6 AAFZ01025482
UNCU.WHA5.PA. Uncultured whale5 AAFZ01023560
UNCU.WHA4. Uncultured bacterium whale4 AAFZ01020819
BART.HENS. Bartonella henselae str. Houston-1 BX897699
BART.QUIN. Bartonella quintana str. Toulouse BX897700
NEOR.SENN. Neorickettsia sennetsu strain Miyayama GSP
CAUL.CRES. Caulobacter crescentus AF255738
MESO.SPEC. Mesorhizobium species GSP
PARA.DENI. Paracoccus denitrificans strain 1222 GSP
UNCU.BON2.PA. Uncultured bacterium bone2 AAGA01018614
JANN.SPEC. Jannaschia sp. CCS1 GSP
UNCU.WHA2. Uncultured bacterium whale2 AAFZ01006233
SILI.POME. Silicibacter pomeroyi DSS-3 CP000031
RHOD.SPHA. Rhodobacter sphaeroides GSP
HYPH.NEPT. Hyphomonas neptunium strain ATCC 15444 GSP
SPHI.AROM. Sphingomonas aromaticivorans GSP
SPHI.ALAS. Sphingopyxis alaskensis RB2256 GSP
ERYT.LITO. Erythrobacter litoralis HTCC2594 AAGG01000004
UNCU.FAR4. Uncultured bacterium farm4 AAFX01039956
UNCU.FAR5. Uncultured bacterium farm5 AAFX01005130
SPHI.ELOD. Sphingomonas elodea tmRNA Website
RICK.AKAR. Rickettsia akari str. Hartford AAFE01000001
RICK.RICK. Rickettsia rickettsii AADJ01000001
RICK.CONO.-2.PA. Rickettsia conorii strain URRCMFEe5 AY345095
RICK.CONO.-3.PA. Rickettsia conorii strain URRCMFEe32 AY345094
RICK.PROW. Rickettsia prowazekii AJ235273
RICK.TYPH. Rickettsia typhi GSP
RICK.CONO.-1. Rickettsia conorii strain Malish 7 AE008661
ANAP.MARG. Anaplasma marginale strain St. Maries tmRNA Website
ANAP.PHAG. Anaplasma phagocytophila strain HZ GSP
EHRL.CHAF. Ehrlichia chaffeensis Arkansas GSP
EHRL.RUMI. Ehrlichia ruminantium strain Welgevonden CR767821
EHRL.CANI. Ehrlichia canis GSP
WOLB.SPEC.-3. Wolbachia pipientis endosymbiont of Culex quinquefasciatus GSP
WOLB.SPEC.-1. Wolbachia pipientis (species wMel) endosymbiont of Drosophila melanogaster GSP
WOLB.SPEC.-2. Wolbachia species endosymbiont of Brugia malayi (nematode) GSP
Betaproteobacteria DECH.AROM. Dechloromonas aromatica CP000089
DECH.AGIT. Dechloromonas agitata strain CKB AY911531
AZOS.ORYZ. Azospira oryzae strain PS AY911532
AZOA.SPEC.-2. Azoarcus species EbN1 CR555306
TREM.PRIN.-1. Tremblaya princeps 1 AF481102
TREM.PRIN.-2. Tremblaya princeps 2 tmRNA Website
TREM.PRIN.-3. Tremblaya princeps 3 tmRNA Website
TREM.PRIN.-4. Tremblaya princeps 4 tmRNA Website
TREM.PRIN.-5. Tremblaya princeps 5 tmRNA Website
TREM.PRIN.-6. Tremblaya princeps 6 tmRNA Website
AZOA.SPEC.-1. Azoarcus species BH72 tmRNA Website
CHRO.VIOL.-1. Chromobacterium violaceum strain ATCC 07461 tmRNA website
CHRO.VIOL.-2. Chromobacterium violaceum strain ATCC12472 AE016917
NEIS.GONO. Neisseria gonorrhoeae U68080 GSP
NEIS.LACT. Neisseria lactamica GSP
NEIS.MENI.-1. Neisseria meningitidis AL162755
NEIS.MENI.-2. Neisseria meningitidis AE002098
NITR.MULT. Nitrosospira multiformis GSP
UNCU.FAR7. Uncultured bacterium farm7 AAFX01088509
UNCU.POL1.PA. Uncultured bacterium pollen1 CB818296
UNCU.U02-. Uncultured U02 tmRNA website
NITR.EURO. Nitrosomonas europaea AL954747
METH.GLYC. Methylobacillus glycogenes tmRNA website
METH.FLAG. Methylobacillus flagellatus GSP
NITR.CRYO. Nitrosomonas cryotolerans tmRNA website
UNCU.U04-.PA. Uncultured U04 (partial sequence) tmRNA website
UNCU.ZEB1.PA. Uncultured bacterium zebu1 CB042349
ALCA.FAEC. Alcaligenes faecalis tmRNA website
BORD.AVIU. Bordetella avium GSP
UNCU.FAR3. Uncultured bacterium farm3 AAFX01035522
BORD.PARA. Bordetella parapertussis GSP
BORD.PERT. Bordetella pertussis GSP
BORD.BRON.AM. Bordetella bronchiseptica (ambiguous residues) GSP
ALCA.VISC. Alcaligenes viscolactis strain S-2 AY911519
UNCU.ROO1.PA. Uncultured bacterium root1 CA305493
UNCU.HUM2.PA. Uncultured bacterium human2 AW835368
UNCU.STR1. Uncultured bacterium stronglyoides1 CZ539665
UNCU.RIC2. Uncultured bacterium rice2 AAAA02043629
UNCU.AED1. Uncultured bacterium aedes1 AAGE01398527
POLA.SPEC. Polaromonas species JS666 AAFQ02000000
RUBR.GELA. Rubrivivax gelatinosus strain PM1 AAEM01000001
THIO.DENI. Thiobacillus denitrificans AAFH01000001
COMA.TEST. Comamonas testosteroni tmRNA website
HYDR.PALL. Hydrogenophaga palleronii tmRNA website
VARI.PARA. Variovorax paradoxus tmRNA website
BURK.PSEU. Burkholderia pseudomallei GSP
BURK.MALL. Burkholderia mallei strain ATCC 23344 GSP
BURK.THAI. Burkholderia thailandensis E264 GSP
BURK.CENO. Burkholderia cenocepacia strain J2315 GSP
BURK.CEPA.-1. Burkholderia cepacia strain R1808 GSP
BURK.CEPA.-2. Burkholderia cepacia strain R18194 GSP
BURK.FUNG. Burkholderia fungorum GSP
ALCA.EUTR. Alcaligenes eutrophus [Note!] X51902
RALS.EUTR. Ralstonia eutropha [Note!] CP000090
RALS.META. Ralstonia metallidurans [Note!] GSP
RALS.SOLA. Ralstonia solanacearum NC_003295 AL646061
RALS.PICK. Ralstonia pickettii tmRNA website
Gammaproteobacteria ACID.FERR.-1. Acidithiobacillus ferroxidans strain ATCC 23270 [Note!] GSP
ACID.FERR.-2. Acidithiobacillus ferroxidans [Note!] tmRNA website
FRAN.TULA. Francisella tularensis GSP
PROT.SAR1.-1. Proteobacteria SAR-1 AACY01013710
DICH.NODO. Dichelobacter nodosus U20246
XYLE.FAST.-1. Xylella fastidiosa strain 9a5c AE004078
XYLE.FAST.-2. Xylella fastidiosa Dixon Strain GSP
XYLE.FAST.-3. Xylella fastidiosa Ann-1 Strain GSP
XYLE.FAST.-4. Xylella fastidiosa strain Temecula1 (Temecula1) AE012561
STEN.MALT. Stenotrophomonas maltophilia GSP
XANT.CAMP. Xanthomonas campestris AE012247
XANT.AXON. Xanthomonas axonpodis AE011783
XANT.ORYZ. Xanthomonas oryzae pv. oryzae KACC10331 AE013598
UNCU.RIC4. Uncultured bacterium rice4 AACV01028831
NITR.OCEA. Nitrosococcus oceani ATCC 19707 GSP
UNCU.WHA1. Uncultured bacterium whale1 AAFZ01002114
LEGI.PNEU. Legionella pneumophila U68079
BACT.SAR1.-1.PA. Bacteria SAR-1 AACY01111840
BACT.SAR1.-2.PA. Bacteria SAR-1 AACY01029760
SHEW.SAR2.-2. Shewanella SAR-2 AACY01086943
PROT.SAR1.-3. Proteobacteria SAR-1 AACY01081395
COXI.BURN. Coxiella burnetii GSP
METH.CAPS. Methylococcus capsulatus strain Bath AE017282
SHEW.SAR1.-2. Shewanella SAR-1 AACY01087071
UNCU.MAR1. Uncultured marine gamma proteobacterium EBAC20E09 AY552545
UNCU.U01A. Uncultured U01a tmRNA website
UNCU.U01B. Uncultured U01b tmRNA website
MICR.DEGR. Microbulbifer degradans GSP
PSEU.AERU. Pseudomonas aeruginosa GSP
AZOT.VINE. Azotobacter vinelandii GSP
UNCU.BON1.PA. Uncultured bacterium bone1 AAGA01012173
PSEU.FLUO.-1. Pseudomonas fluorescens Strain Pf0-1 GSP
PSEU.FLUO.-2. Pseudomonas fluorescens SBW25 GSP
UNCU.HUM1.PA. Uncultured bacterium human1 BE092250
UNCU.CHI1.PA. Uncultured bacterium chicken1 CL280628
PSEU.FLUO.-3. Pseudomonas fluorescens strain Pf-5 GSP
PSEU.FLUO.-4. Pseudomonas fluorescens strain ATCC 17400 AY911520
PSEU.CHLO. Pseudomonas chlororaphis strain 30-84 AY911521
PSEU.PUTI.-2. Pseudomonas putida strain ATCC 12633 (ATCC 12633) AY911522
PSEU.PUTI.-1. Pseudomonas putida GSP
PSEU.SYRI.-1. Pseudomonas syringae strain DC3000 GSP
PSEU.SYRI.-2. Pseudomonas syringae GSP
PSEU.SYRI.-3. Pseudomonas syringae pathovar phaseolicola strain 1448A GSP
MORA.CATA. Moraxella catarrhalis AX067460
ACIN.ADP1. Acinetobacter ADP1 GSP
ACIN.BAUM.PA. Acinetobacter baumannii AR319033
UNCU.CRE1. Uncultured bacterium c_remanei1 AAGD01019434
UNCU.BON3. Uncultured bacterium bone3 AAGA01018978
PSYC.273-. Psychrobacter 273-4 GSP
PSYC.URAT. Psychrobacter urativorans AY846305
CHRO.SALE. Chromohalobacter salexigens strain DSM3043 GSP
MARI.HYDR. Marinobacter hydrocarbonoclasticus U68077
UNCU.FLA1.PA. Uncultured bacterium flatworm1 BU276175
GAMM.SAR1. Gammaproteobacteria SAR-1 AACY01081759
PROT.SAR1.-2. Proteobacteria SAR-1 AACY01117420
COLW.PSYC. Colwellia psychrerythraea strain 34H GSP
PSEU.HALO. Pseudoalteromonas haloplanktis U68076
UNCU.WW11. Uncultured WW11 AF389985
IDIO.LOIH. Idiomarina loihiensis L2TR AE017340
PHOT.PHOS. Photobacterium phosphoreum AY040837
PHOT.PROF. Photobacterium profundum strain SS9 CR378665
SHEW.PUTR.-1. Shewanella putrefaciens GSP
SHEW.PUTR.-2. Shewanella putrefaciens CN-32 GSP
SHEW.SPEC. Shewanella species PV-4 GSP
SHEW.DENI. Shewanella denitrificans OS-217 GSP
SHEW.SAR1.-1. Shewanella SAR-1 AACY01043347
SHEW.SAR2.-1. Shewanella SAR-2 AACY01092819
VIBR.FISC. Vibrio fischeri GSP
VIBR.CHOL. Vibrio cholerae U39068 U02372 GSP
VIBR.PARA. Vibrio parahaemolyticus RIMD 2210633 AP005057
VIBR.VULN. Vibrio vulnificus AE016798 AP005333
AERO.HYDR.-1. Aeromonas hydrophila strain PPD134/91 AY442269
AERO.HYDR.-2. Aeromonas hydrophila strain ATCC 7966 GSP
AERO.SALM. Aeromonas salmonicida U68075
UNCU.VLW3. Uncultured VLW3 AF389968
UNCU.VLW4. Uncultured VLW4 AF389969
UNCU.VLS1.-3. Uncultured VLS11 [Note!] AF389970
UNCU.RCA3. Uncultured RCA3 AF389971
UNCU.VLS1.-4. Uncultured VLS13 AF389973
UNCU.WW-9. Uncultured WW9 AF389974
UNCU.WW10. Uncultured WW10 AF389975
UNCU.VLW5. Uncultured VLW5 AF389976
UNCU.VLW6. Uncultured VLW6 AF389977
UNCU.RCA4. Uncultured RCA4 [Note!] AF389978
UNCU.RCA7. Uncultured RCA7 AF389981
UNCU.RCA8. Uncultured RCA8 AF389982
UNCU.LEM1. Uncultured LEM1 AF389983
UNCU.LEM2. Uncultured LEM2 AF389984
WIGG.BREV. Wigglesworthia brevipalpis BA000021
BLOC.FLOR. Blochmannia floridanus BX248583
EWRI.AMYL. Erwinia amylovora GSP
MANN.SUCC. Mannheimia succiniciproducens MBEL55E AE016827
HAEM.DUCR.-2. Haemophilus ducreyi strain NCTC 10945 AX048594
HAEM.INFL.-2. Haemophilus influenzae strain R2866 AADP01000001
HAEM.INFL.-3. Haemophilus influenzae strain R2846 AADO01000004
HAEM.INFL.-4. Haemophilus influenzae strain 86-028NP CQ872938
PAST.MULT. Pasteurella multocida NC_002663
MANN.HAEM. Mannheimia haemolytica GSP
HAEM.SOMN. Haemophilus somnus GSP
HAEM.INFL.-1. Haemophilus influenzae U32753 U32808
HAEM.DUCR.-1. Haemophilus ducreyi AE017151
ACTI.PLEU. Actinobacillus pleuropneumoniae GSP
ACTI.ACTI. Actinobacillus actinomycetemcomitans GSP
BUCH.APHI.-1. Buchnera aphicola strain Sg (Schizaphis graminum) AE014094
BUCH.APHI.-2. Buchnera aphicola strain APS AP001118
BUCH.APHI.-3. Buchnera aphidicola strain Bp (Baizongia pistaciae) AE014016
PHOT.ASYM. Photorhabdus asymbiotica GSP
PHOT.LUMI. Photorhabdus luminescens BX571870
SHIG.FLEX. Shigella flexneri GSP
SHIG.DYSE. Shigella dysenteriae strain M131649 GSP
ESCH.COLI.-1. Escherichia coli K12 D12501 X16382
ESCH.COLI.-2. Escherichia coli strain CFT073 AE014075
ESCH.COLI.-3. Escherichia coli O157:H7 strains EDL933 and RIMD050995 AE005174 BA000007
ENTE.CLOA. Enterobacter cloacae AY491434
ENTE.AERO. Enterobacter aerogenes strain ATCC 13048 AY491435
PROV.RETT. Providencia rettgeri AF440353
ENTE.SAKA. Enterobacter sakazakii tmRNA Website
SERR.MARC.-1. Serratia marcescens strain BH tmRNA Website
SERR.MARC.-2. Serratia marcescens strain Db11 GSP
PANT.STEW. Pantoea stewartii strain DC283 GSP
PROT.VULG. Proteus vulgaris strain ATCC 13315 AY846304
KLEB.AERO. Klebsiella aerogenes NTCT 9528 AX048500
KLEB.PNEU. Klebsiella pneumoniae GSP
ERWI.CARO. Erwinia carotovora subsp. atroseptica GSP
ERWI.CHRY. Erwinia chrysanthemi GSP
SALM.PARA. Salmonella paratyphi strains A and B GSP GSP
SALM.BONG. Salmonella bongori GSP
SALM.ENTE.-3. Salmonella enterica subsp. Diarizonae GSP
SALM.TYPH.-1. Salmonella typhimurium GSP
SALM.TYPH.-2. Salmonella typhi GSP
SALM.ENTE.-1. Salmonella enterica serovars Enteritidis and Dublin GSP
SALM.ENTE.-4. Salmonella enterica serovar Choleraesuis str. SC-B67 AE017220
SALM.ENTE.-2. Salmonella enterica subsp. Arizonae AF389960
CITR.RODE. Citrobacter rodentium GSP
UNCU.RCA1. Uncultured RCA1 AF389942
UNCU.VLS1.-1. Uncultured VLS1 [Note!] AF389943
UNCU.VLS3. Uncultured VLS3 AF389945
UNCU.VLS4. Uncultured VLS4 AF389946
UNCU.WW-1. Uncultured WW1 AF389947
UNCU.RCA2. Uncultured RCA2 AF389948
UNCU.WW-2. Uncultured WW2 AF389949
UNCU.WW-3. Uncultured WW3 AF389950
UNCU.QL-1. Uncultured QL1 AF389951
UNCU.WW-4. Uncultured WW4 AF389952
UNCU.VLS1.-2.PA. Uncultured VLS10 (partial sequence) AF389967
UNCU.VLS5. Uncultured VLS5 AF389953
UNCU.FS-1. Uncultured FS1 AF389954
UNCU.VLS6. Uncultured VLS6 AF389955
UNCU.FS-2. Uncultured FS2 AF389956
UNCU.WW-5. Uncultured WW5 AF389957
UNCU.WW-6. Uncultured WW6 AF389958
UNCU.VLW1. Uncultured VLW1 AF389959
UNCU.VLS7. Uncultured VLS7 AF389961
UNCU.VLS8. Uncultured VLS8 AF389962
UNCU.VLS9. Uncultured VLS9 AF389963
UNCU.VLW2. Uncultured VLW2 AF389966
UNCU.WW-7. Uncultured WW7 AF389964
UNCU.WW-8. Uncultured WW8 AF389965
YERS.ENTE. Yersinia entericolitica GSP
YERS.PEST. Yersinia pestis GSP
UNCU.WEE1.PA. Uncultured bacterium weevil1 CN612381
Deltaproteobacteria LAWS.INTR. Lawsonia intracellularis GSP
DESU.VULG. Desulfovibrio vulgaris strain Hildenborough GSP
DESU.DESU.-2. Desulfovibrio desulfuricans strain G20 AABN02000009 GSP
DESU.DESU.-1. Desulfovibrio desulfuricans U68081
DESU.PSYC. Desulfotalea psychrophila strain LSv54 CR522870
UNCU.CION. Uncultured bacterium ciona1 AACT01039607
BDEL.BACT. Bdellovibrio bacteriovorus HD100 ACBX842656
UNCU.FAR8. Uncultured bacterium farm8 AAFX01004374
DESU.ACET. Desulfuromonas acetoxidans GSP
GEOB.SULF. Geobacter sulfurreducens strain PCA GSP
GEOB.META. Geobacter metallireducens GSP
BACT.MARI. Bacteriovorax marinus GSP
MYXO.XANT. Myxococcus xanthus strain DK 1622 GSP
Epsilonproteobacteria WOLI.SUCC. Wolinella succinogenes BX571661
CAMP.LARI. Campylobacter lari RM2100 AAFK01000004
CAMP.FETU.-2. Campylobacter fetus strain 23D AY2112269
CAMP.FETU.-1. Campylobacter fetus AX048586
CAMP.COLI.-1. Campylobacter coli strain RM2228 AAFL01000002
CAMP.COLI.-2. Campylobacter coli strain BM2509 AX048589
CAMP.JEJU. Campylobacter jejuni GSP
HELI.PYLO. Helicobacter pylori AE000590
HELI.HEPA. Helicobacter hepaticus AE017149
HELI.MUST. Helicobacter mustelae GSP
Fusobacteria FUSO.NUCL.-1. Fusobacterium nucleatum ATCC 25586 GSP
FUSO.NUCL.-2. Fusobacterium nucleatum GSP
FUSO.NUCL.-3. Fusobacterium nucleatum ATCC 49256 GSP
Dictyoglomi DICT.THER. Dictyoglomus thermophilum strain DSM 3960 GSP
Actinomycetes ACTI.NAES. Actinomyces naeslundii strain MG1 GSP
UNCU.HOO2. Uncultured bacterium hookworm2 BM130131
BIFI.LONG. Bifidobacterium longum AABM00000000
ARTH.SPEC. Arthrobacter species strain FB24 GSP
RUBR.XYLA. Rubrobacter xylanophilus GSP
PROP.ACNE.-1. Propionibacterium acnes strain KPA171202 AE017283
PROP.ACNE.-2. Propionibacterium acnes CQ363774
STRE.AURE. Streptomyces aureofaciens AY616521
STRE.COEL. Streptomyces coelicolor AL939114
STRE.AVER. Streptomyces avermitilis BA000030
STRE.COLL. Streptomyces collinus AY485228
CLAV.MICH. Clavibacter michiganensis GSP
BREV.LINE. Brevibacterium linens GSP
THER.FUSC. Thermobifida fusca GSP
TROP.WHIP. Tropheryma whipplei GSP
KINE.RADI. Kineococcus radiotolerans GSP
FRAN.SPEC.-1. Frankia sp. CcI3 GSP
FRAN.SPEC.-2. Frankia sp. EAN1pec GSP
LEIF.XYLI. Leifsonia xyli subsp. xyli strain CTCB07 AE016822
GORD.RUBR. Gordonia rubripertincta AY911523
NOCA.FARC. Nocardia farcinica AP006618
NOCA.ASTE.-1. Nocardia asteroides 1 AX048666
NOCA.ASTE.-2. Nocardia asteroides 2 AX048665
RHOD.EQUI. Rhodococcus equi strain X AY846303
MYCO.AVIU.-2. Mycobacterium avium strain k10 AE017238
MYCO.SCRO. Mycobacterium scrofulaceum AX048664
MYCO.INTR. Mycobacterium intracellulare AX048662
MYCO.XENO. Mycobacterium xenopi AX048660
MYCO.FLAV. Mycobacterium flavescens AX048652
MYCO.MALM. Mycobacterium malmoense AX048650
MYCO.SZUL. Mycobacterium szulgai AX048648
MYCO.CHEL. Mycobacterium chelonae AX048646
MYCO.KANS. Mycobacterium kansasii AX048644
MYCO.GORD. Mycobacterium gordonae AX048642
MYCO.MICR.-2. Mycobacterium microti AX048656
MYCO.TUBE.-2. Mycobacterium tuberculosis strain 210 GSP
MYCO.MARI.-2. Mycobacterium marinum AX048654
MYCO.LEPR. Mycobacterium leprae Z98271
MYCO.AVIU.-1. Mycobacterium avium strain 104 GSP
MYCO.TUBE.-1. Mycobacterium tuberculosis X60301
MYCO.BOVI. Mycobacterium bovis GSP
MYCO.MARI.-1. Mycobacterium marinum GSP
MYCO.SMEG. Mycobacterium smegmatis strain MC2 GSP
CORY.DIPH. Corynebacterium diphtheriae GSP
CORY.GLUT. Corynebacterium glutamicum BA000036
CORY.EFFI. Corynebacterium efficiens BA000035
Firmicutes/Bacilli PAEN.LARV. Paenibacillus larvae GSP
PAEN.MACE. Paenibacillus macerans strain NRS277 AY911524
BACI.THUR. Bacillus thuringiensis serovar konkukian strain 97-27 AE017355
BACI.MEGA. Bacillus megaterium AF019911
BACI.HALO. Bacillus halodurans BA000004
BACI.CLAU. Bacillus clausii strain KSM-K16 AP006627
BACI.SUBT. Bacillus subtilis D25231
BACI.LICH. Bacillus licheniformis strain ATCC 14580 CP000002
BACI.STEA. Bacillus stearothermophilus GSP
GEOB.KAUS. Geobacillus kaustophilus HTA426 BA000043
OCEA.IHEY. Oceanobacillus iheyensis BA000028
EXIG.SPEC. Exiguobacterium strain 255-15 GSP
STAP.SAPR. Staphylococcus saprophyticus AF375585
STAP.EPID. Staphylococcus epidermidis AF269456
STAP.AURE.-1. Staphylococcus aureus strains COL and NCTC8325 GSP
STAP.AURE.-2. Staphylococcus aureus strain EMRSA-16 GSP
STAP.AURE.-3. Staphylococcus aureus strain MSSA 476 GSP
STAP.AURE.-4. Staphylococcus aureus strains Mu50 and N315 BA000017 BA000018
STAP.AURE.-5. Staphylococcus aureus sbsp. aureus MW2 BA000033
STAP.XYLO. Staphylococcus xylosus AF375587
BACI.ANTH. Bacillus anthracis strain Ames and A2012 GSP GSP
BACI.CERE. Bacillus cereus strain 10987 GSP
LIST.INNO.-1. Listeria innocua AL596172
LIST.INNO.-2. Listeria innocua strain ATCC 12210 (ATCC 12210) AX048603
LIST.MONO. Listeria monocytogenes AF375584
LIST.GRAY.-1. Listeria grayi strain NCTC 10812 AF440349
LIST.GRAY.-2. Listeria grayi strain NCTC 10815 AF440336
LIST.IVAN. Listeria ivanovii AF440342
LIST.SEEL. Listeria seeligeri AF440350
LIST.WELS. Listeria welshimeri AF440351
LEUC.MESE. Leuconostoc mesenteroides [Note!] AF375571
LEUC.PSEU. Leuconostoc pseudomesenteroides AF375570
LEUC.LACT. Leuconostoc lactis AF375569
LACT.DELB.-1. Lactobacillus delbrueckii subsp. lactis strain NCTC 662 AF440335
LACT.DELB.-2. Lactobacillus delbrueckii strain ATCC BAA-365 GSP
LACT.GASS. Lactobacillus gasseri GSP
LACT.JOHN. Lactobacillus johnsonii AE017202
LACT.CASE. Lactobacillus casei GSP
LACT.ACID. Lactobacillus acidophilus strain NCFM CP000033
LACT.BREV. Lactobacillus brevis AL935259
LACT.SAKE. Lactobacillus sakei AF400065
LACT.HELV. Lactobacillus helveticus AF375575
LACT.GALL. Lactobacillus gallinarum AF375577
LACT.PLAN.-1. Lactobacillus plantarum strain CNRZ211 AF375576
LACT.PLAN.-3. Lactobacillus plantarum strain WCSF1 AL935259
CARN.PISC.PA. Carnobacterium piscicola (Partial Sequence) AF275938
ENTE.FAEC.-1. Enterococcus faecalis strain V583 GSP
ENTE.FAEC.-2. Enterococcus faecium AF375581 GSP
ENTE.DURA. Enterococcus durans AF375582
OENO.OENI. Oenococcus oeni GSP
LACT.LACT.-1. Lactococcus lactis subsp. lactis strain NCDO2118 [Note!] AF375552
LACT.LACT.-2. Lactococcus lactis subsp. lactis bv. diacetylactis strain IL1403 [Note!] AF375553
LACT.LACT.-3. Lactococcus lactis subsp. cremoris strain IL582 [Note!] AF375556
LACT.LACT.-4. Lactococcus lactis subsp. lactis strain IL2961 [Note!] AF375554
LACT.GARV. Lactococcus garvieae AF375579
LACT.PLAN.-2. Lactococcus plantarum strain CNRZ1322 AF375567
PEDI.PENT. Pediococcus pentosaceus GSP
LACT.RAFF. Lactococcus raffinolactis AF375578
STRE.AGAL.-1. Streptococcus agalactiae strain A909 GSP
STRE.AGAL.-2. Streptococcus agalactiae strain NEM316 AL766848
STRE.SOBR. Streptococcus sobrinus strain 6715 GSP
STRE.ZOOE. Streptococcus zooepidemicus GSP
STRE.EQUI. Streptococcus equi GSP
STRE.UBER. Streptococcus uberis GSP
STRE.PYOG. Streptococcus pyogenes GSP
STRE.SUIS.-1.PA. Streptococcus suis (partial sequence) GSP
STRE.SUIS.-2. Streptococcus suis strain 89/1591 AAFA01000032
STRE.THER.-3. Streptococcus thermophilus strains CNRZ1066 and LMG 18311 CP000024
STRE.THER.-1. Streptococcus thermophilus strain CNRZ1358 AF375568
STRE.THER.-2. Streptococcus thermophilus strain LMD-9 GSP
STRE.GORD. Streptococcus gordonii strain Challis NCTC7868 GSP
STRE.MITI. Streptococcus mitis strain NCTC 12261 GSP
STRE.PNEU. Streptococcus pneumoniae strain 670 GSP
STRE.MUTA. Streptococcus mutans strain UA159 GSP
Firmicutes/Clostridia DESU.HAFN. Desulfitobacterium hafniense GSP
HELI.MOBI. Heliobacillus mobilis AY040838
CLOS.THER. Clostridium thermocellum AABG00000000
THER.TENG. Thermoanaerobacter tengcongensis AE013063
COPR.PROT. Coprothermobacter proteolyticus strain DSM 9218 GSP
MOOR.THER. Moorella thermoacetica GSP
CLOS.PERF.-1. Clostridium perfringens strain ATCC13124 GSP
CLOS.PERF.-2. Clostridium perfringens strain 13 BA000016
CLOS.PERF.-3. Clostridium perfringens AX048592
CLOS.BOTU. Clostridium botulinum GSP
CLOS.TETA. Clostridium tetani tmRNA Website
CLOS.DIFF. Clostridium difficile GSP
CLOS.ACET. Clostridium acetobutylicum AE007587
RUMI.ALBU. Ruminococcus albus strain 8 GSP
CARB.HYDR. Carboxydothermus hydrogenoformans strain Z-2901 GSP
Firmitutes/Mollicutes MYCO.MICR.-1. Mycoplasma mycoides BX842642
MESO.FLOR. Mesoplasma florum AE017263
MYCO.CAPR. Mycoplasma capricolum D13067
UREA.UREA. Ureaplasma urealyticum AE002154
SPIR.KUNK. Spiroplasma kunkelii GSP
MYCO.GENI.-1. Mycoplasma genitalium U39714
MYCO.GENI.-2. Mycoplasma genitalium AY911530
MYCO.MYCO. Mycoplasma mycoides BX842642
MYCO.MOBI. Mycoplasma mobile AE017308
MYCO.PENE. Mycoplasma penetrans strain HF-2 BA000026
MYCO.ARTH. Mycoplasma arthridis GSP
UNCU.TOX1.PA. Uncultured bacterium Toxoplasma2 AF092791
UNCU.TOX2.PA. Uncultured bacterium Toxoplasma1 AF092786
UNCU.HUM4.PA. Uncultured bacterium human4 AF120328
UNCU.HUM5.PA. Uncultured bacterium human5 CB113832
UNCU.HUM6.PA. Uncultured bacterium human6 BF990150
MYCO.PNEU. Mycoplasma pneumoniae AE000035
MYCO.HYOP. Mycoplasma hyopneumoniae strain 232 AE017332
MYCO.GALL. Mycoplasma gallisepticum AE016968
MYCO.PULM. Mycoplasma pulmonis AL445565
PHYT.ASTE. Phytoplasma asteris (Onion yellows phytoplasma OY-M) AP006628

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