tmRNAs in phylogenetic order (555)

species listed in alphabetical order...

`Group`	`tmRDB ID`	`Name`	`Accessions`
`Bacteriophages`	`MYCO.SPEC.PH.BXZ1.`	`Mycobacteriophage bxz1`	`NC_004867`
	`BACI.SPEC.PH.G.`	`Bacteriophage G of Bacillus`	`GSP`
	`BACT.SPEC.PH.CP1639.`	`Bacteriophage CP1639`	`AJ304858`

`Aquificae`	`AQUI.AEOL.`	`Aquifex aeolicus`	`AE000657 AE000749`
	`SULF.AZOR.`	`Sulfurihydrogenibium azorense Az-Ful`	`GSP`

`Deinococcus-Thermus`	`THER.THER.`	`Thermus thermophilus`	`Y15063`
	`UNCU.HUM3.`	`Uncultured bacterium human3`	`AI752555`
	`DEIN.RADI.`	`Deinococcus radiodurans`	`GSP`

`Thermodesulfobacteria`	`THER.COMM.`	`Thermodesulfobacterium commune strain DSM 2178`	`GSP`

`Thermotogae`	`THER.NEAP.`	`Thermotoga neapolitana strain DSM 4359`	`GSP`
	`THER.MARI.`	`Thermotoga maritima`	`AE001726 AE001727 GSP`

`Planctomyctes`	`GEMM.OBSC.`	`Gemmata obscuriglobus strain UQM2246`	`GSP`
	`RHOD.BALT.`	`Rhodopirellula baltica`	`BX294141`

`Chlamydiae/Verrucomicrobia`	`CHLA.PSIT.`	`Chlamydophila psittaci`	`GSP`
	`CHLA.PNEU.`	`Chlamydophila pneumoniae`	`AE001597`
	`CHLA.ABOR.`	`Chlamydophila abortus`	`GSP`
	`CHLA.TRAC.`	`Chlamydia trachomatis`	`AE001276 AE001277`
	`CHLA.MURI.`	`Chlamydia muridarum`	`AE002296`
	`PARA.UWE2.`	`Parachlamydia UWE25 (host: Acanthamoeba sp.)`	`BX908798`
	`VERR.SPIN.`	`Verrucomicrobium spinosum DSM4136`	`GSP`

`Chloroflexi`	`THER.ROSE.`	`Thermomicrobium roseum strain DSM 5159`	`GSP`
	`CHLO.AURA.`	`Chloroflexus aurantiacus`	`AY040836`
	`DEHA.ETHE.`	`Dehalococcoides ethenogenes strain 195`	`GSP`

`Bacteroides/Chlorobi`	`PORP.GING.`	`Porphyromonas gingivalis`	`GSP`
	`CHLO.TEPI.`	`Chlorobium tepidum`	`GSP`
	`BACT.FORS.`	`Bacteroides forsythus strain ATCC 43037`	`GSP`
	`UNCU.ANO1.PA.`	`Uncultured bacterium anopheles1`	`BH400891`
	`BACT.THET.`	`Bacteroides thetaiotaomicron`	`AE16945`
	`BACT.FRAG.`	`Bacteroides fragilis`	`GSP`
	`PREV.INTE.`	`Prevotella intermedia strain 17`	`GSP`
	`PREV.RUMI.`	`Prevotella ruminicola strain 23`	`GSP`
	`CYTO.HUTC.`	`Cytophaga hutchinsonii`	`GSP`
	`UNCU.FAR6.PA.`	`Uncultured bacterium farm6`	`AAFX01065096`
	`SALI.RUBE.`	`Salinibacter ruber strain DSMZ 13855`	`GSP`
	`CHLO.AGGR.`	`Chlorochromatium aggregatus`	`GSP`

`Cyanobacteria`	`OSCI.SPEC.`	`Oscillatoria species PCC6304`	`AY082651`
	`OSCI.SANC.`	`Oscillatoria sancta`	`AY911518`
	`ANAB.SPEC.`	`Anabaena sp. PCC7120`	`M21659`
	`ANAB.VARI.`	`Anabaena variabilis`	`GSP`
	`CHRO.SPEC.`	`Chroococcidiopsis species PCC6712`	`AY082650`
	`NOST.PUNC.`	`Nostoc punctiforme`	`GSP`
	`FREM.DIPL.`	`Fremyella diplosiphon`	`AY082653`
	`PLEC.BORY.`	`Plectonema boryanum`	`AY082652`
	`TRIC.ERYT.`	`Trichodesmium erythraeum`	`GSP`
	`SYNE.SPEC.-1.`	`Synechocystis sp. PCC6803`	`D90916`
	`SYNE.SPEC.-2.`	`Synechococcus sp. PCC6301`	`AB003477`
	`CROC.WATS.`	`Crocosphaera watsonii`	`GSP`
	`THER.ELON.`	`Thermosynechococcus elongatus`	`AP005369`
	`CYAN.GRAC.`	`Cyanobium gracile`	`AF251551`
	`SYNE.SPEC.-7.`	`Synechococcus species CC9311`	`GSP`
	`SYNE.SPEC.-3.`	`Synechococcus sp. PCC6307`	`AF251551`
	`SYNE.SPEC.-4.`	`Synechococcus sp. WH8102`	`BX548020`
	`PROC.MARI.-2.`	`Prochlorococcus marinus MIT9313`	`BX548175`
	`PROC.MARI.-3.`	`Prochlorococcus marinus strain SS120`	`AE017161`
	`PROC.MARI.-1.`	`Prochlorococcus marinus MED4`	`BX548174`
	`SYNE.SPEC.-5.`	`Synechococcus sp. PCC7009`	`AY082654`
	`SYNE.SPEC.-6.`	`Synechococcus sp. PCC6904`	`AY082655`
	`GLOE.VIOL.`	`Gloeobacter violaceus`	`AP006575`

`Organelles/Chloroplasts`	`CYAN.PARA.CY.`	`Cyanophora paradoxa cyanelle`	`U30821`
	`PAVL.LUTH.CL.PA.`	`Pavlova lutheri chloroplast (partial sequence)`	`X65961`
	`BOLI.PACI.CL.`	`Bolidomonas pacifica chloroplast`	`AF169626`
	`GUIL.THET.CL.`	`Guillardia theta chloroplast`	`AF041468`
	`THAL.WEIS.CL.`	`Thalassiosira weissflogii chloroplast`	`AF049491`
	`SKEL.COST.CL.`	`Skeletonema costatum chloroplast`	`AF550357`
	`PYLA.LITT.CL.`	`Pylaiella littoralis chloroplast`	`AF169625`
	`GRAC.TENU.CL.`	`Gracilaria tenuistipitata var. liui chloroplast`	`AY673996`
	`PORP.PURP.CL.`	`Porphyra purpurea chloroplast`	`U38804`
	`CYAN.CALD.CL.`	`Cyanidium caldarium chloroplast`	`AF022186`
	`ODON.SINE.CL.`	`Odontella sinensis chloroplast`	`Z67753`
	`AMPH.COFF.CL.`	`Amphora coffaeformis chloroplast`	`AF550350`
	`THAL.PSEU.CL.`	`Thalassiosira pseudonana chloroplast`	`AAFD01001440`
	`FRAG.PINN.CL.`	`Fragilaria pinnata chloroplast`	`AF550351`
	`EMIL.HUXL.CL.`	`Emiliania huxleyi chloroplast`	`GSP`
	`PRYM.PARV.CL.`	`Prymnesium parvum chloroplast`	`AF550354`
	`RHOD.MARI.CL.`	`Rhodosorus marinus chloroplast`	`AF550356`
	`GIGA.PAPI.CL.`	`Gigartina papillata chloroplast`	`AF550352`
	`PRIO.LANC.CL.`	`Prionitis lanceolata chloroplast`	`AF550353`
	`CYAN.MERO.CL.`	`Cyanidioschyzon merolae chloroplast`	`AB002583`
	`RHOD.SALI.CL.`	`Rhodomonas salina chloroplast`	`AF550355`
	`NEPH.OLIV.CL.`	`Nephroselmis olivacea`	`AF137379`
	`MESO.VIRI.CL.`	`Mesostigma viride chloroplast`	`AF166114`

`Organelles/Mitochondria`	`RECL.AMER.MT.-1.`	`Reclinomonas americana mitochondrium`	`AF007261`
	`RECL.AMER.MT.-2.`	`Reclinomonas americana mitochondrium`	`tmRNA website`
	`RECL.AMER.MT.-3.`	`Reclinomonas americana mitochondrium`	`tmRNA website`
	`SECU.ECUA.MT.`	`Seculamonas ecuadoriensis mitochondrion`	`tmRNA website`
	`HIST.AROI.MT.`	`Histiona aroides mitochondrion`	`tmRNA website`
	`JAKO.LIBE.MT.`	`Jakoba libera mitochondrium`	`tmRNA website`

`Fibrobacteres/Acidobacteria`	`UNCU.FAR2.`	`Uncultured bacterium farm2`	`AAFX01031538`
	`ACID.SPEC.`	`Acidobacterium Ellin6076`	`GSP`
	`FIBR.SUCC.`	`Fibrobacter succinogenes strain S85`	`GSP`
	`ACID.CAPS.`	`Acidobacterium capsulatum strain ATCC 51196`	`GSP`

`Spirochaetes`	`BORR.GARI.`	`Borrelia garinii Pbi`	`CP000013`
	`BORR.BURG.`	`Borrelia burgdorferi`	`AE001118`
	`TREP.DENT.`	`Treponema denticola`	`GSP`
	`TREP.PALL.`	`Treponema pallidum`	`GSP`
	`LEPT.INTE.`	`Leptospira interrogans`	`AE011207`

`Nitrospirae`	`LEPT.GRII.`	`Leptospirillum species group II`	`AADL01000021`
	`LEPT.GIII.`	`Leptospirillum species group III`	`AADL01000160`
	`LEPT.FERR.PA.`	`Leptospirillum ferrooxidans`	`AY204390`

`Alphaproteobacteria`	`RHOD.PALU.`	`Rhodopseudomonas palustris`	`BX571963`
	`MAGN.MAGN.-1.`	`Magnetospirillum magnetotacticum strain MS-1`	`GSP`
	`MAGN.MAGN.-2.`	`Magnetospirillum magnetotacticum strain MS-1`	`GSP`
	`ALPH.SAR1.`	`Alphaproteobacteria SAR-1`	`AACY01003734`
	`UNCU.WHA3.`	`Uncultured whale3`	`AAFZ01019330`
	`MAGN.MC-1.`	`Magnetococcus MC-1`	`GSP`
	`RHOD.RUBR.`	`Rhodospirillum rubrum`	`GSP`
	`GLUC.OXYD.`	`Gluconobacter oxydans 621H`	`CP000009`
	`METH.EXTO.`	`Methylobacterium extorquens`	`tmRNA website`
	`NITR.WINO.`	`Nitrobacter winogradskyi`	`GSP`
	`UNCU.FAR1.`	`Uncultured bacterium farm1`	`AAFX01020036`
	`BRAD.JAPO.`	`Bradyrhizobium japonicum`	`M73823`
	`MESO.LOTI.`	`Mesorhizobium loti`	`AP002997`
	`AGRO.TUME.-1`	`Agrobacterium tumefaciens strain C58`	`AE008121`
	`AGRO.TUME.-2.`	`Agrobacterium tumefaciens NTL4`	`tmRNA Website`
	`AGRO.VITI.`	`Agrobacterium vitis S4`	`tmRNA Website`
	`BRUC.MELI.`	`Brucella melitensis 16M`	`AE009503`
	`SINO.MELI.`	`Sinorhizobium meliloti strain 2011`	`M73824`
	`RHIZ.LEGU.`	`Rhizobium leguminosarum bv. viciae 3841`	`GSP`
	`UNCU.WHA6.`	`Uncultured bacterium whale6`	`AAFZ01025482`
	`UNCU.WHA5.PA.`	`Uncultured whale5`	`AAFZ01023560`
	`UNCU.WHA4.`	`Uncultured bacterium whale4`	`AAFZ01020819`
	`BART.HENS.`	`Bartonella henselae str. Houston-1`	`BX897699`
	`BART.QUIN.`	`Bartonella quintana str. Toulouse`	`BX897700`
	`NEOR.SENN.`	`Neorickettsia sennetsu strain Miyayama`	`GSP`
	`CAUL.CRES.`	`Caulobacter crescentus`	`AF255738`
	`MESO.SPEC.`	`Mesorhizobium species`	`GSP`
	`PARA.DENI.`	`Paracoccus denitrificans strain 1222`	`GSP`
	`UNCU.BON2.PA.`	`Uncultured bacterium bone2`	`AAGA01018614`
	`JANN.SPEC.`	`Jannaschia sp. CCS1`	`GSP`
	`UNCU.WHA2.`	`Uncultured bacterium whale2`	`AAFZ01006233`
	`SILI.POME.`	`Silicibacter pomeroyi DSS-3`	`CP000031`
	`RHOD.SPHA.`	`Rhodobacter sphaeroides`	`GSP`
	`HYPH.NEPT.`	`Hyphomonas neptunium strain ATCC 15444`	`GSP`
	`SPHI.AROM.`	`Sphingomonas aromaticivorans`	`GSP`
	`SPHI.ALAS.`	`Sphingopyxis alaskensis RB2256`	`GSP`
	`ERYT.LITO.`	`Erythrobacter litoralis HTCC2594`	`AAGG01000004`
	`UNCU.FAR4.`	`Uncultured bacterium farm4`	`AAFX01039956`
	`UNCU.FAR5.`	`Uncultured bacterium farm5`	`AAFX01005130`
	`SPHI.ELOD.`	`Sphingomonas elodea`	`tmRNA Website`
	`RICK.AKAR.`	`Rickettsia akari str. Hartford`	`AAFE01000001`
	`RICK.RICK.`	`Rickettsia rickettsii`	`AADJ01000001`
	`RICK.CONO.-2.PA.`	`Rickettsia conorii strain URRCMFEe5`	`AY345095`
	`RICK.CONO.-3.PA.`	`Rickettsia conorii strain URRCMFEe32`	`AY345094`
	`RICK.PROW.`	`Rickettsia prowazekii`	`AJ235273`
	`RICK.TYPH.`	`Rickettsia typhi`	`GSP`
	`RICK.CONO.-1.`	`Rickettsia conorii strain Malish 7`	`AE008661`
	`ANAP.MARG.`	`Anaplasma marginale strain St. Maries`	`tmRNA Website`
	`ANAP.PHAG.`	`Anaplasma phagocytophila strain HZ`	`GSP`
	`EHRL.CHAF.`	`Ehrlichia chaffeensis Arkansas`	`GSP`
	`EHRL.RUMI.`	`Ehrlichia ruminantium strain Welgevonden`	`CR767821`
	`EHRL.CANI.`	`Ehrlichia canis`	`GSP`
	`WOLB.SPEC.-3.`	`Wolbachia pipientis endosymbiont of Culex quinquefasciatus`	`GSP`
	`WOLB.SPEC.-1.`	`Wolbachia pipientis (species wMel) endosymbiont of Drosophila melanogaster`	`GSP`
	`WOLB.SPEC.-2.`	`Wolbachia species endosymbiont of Brugia malayi (nematode)`	`GSP`

`Betaproteobacteria`	`DECH.AROM.`	`Dechloromonas aromatica`	`CP000089`
	`DECH.AGIT.`	`Dechloromonas agitata strain CKB`	`AY911531`
	`AZOS.ORYZ.`	`Azospira oryzae strain PS`	`AY911532`
	`AZOA.SPEC.-2.`	`Azoarcus species EbN1`	`CR555306`
	`TREM.PRIN.-1.`	`Tremblaya princeps 1`	`AF481102`
	`TREM.PRIN.-2.`	`Tremblaya princeps 2`	`tmRNA Website`
	`TREM.PRIN.-3.`	`Tremblaya princeps 3`	`tmRNA Website`
	`TREM.PRIN.-4.`	`Tremblaya princeps 4`	`tmRNA Website`
	`TREM.PRIN.-5.`	`Tremblaya princeps 5`	`tmRNA Website`
	`TREM.PRIN.-6.`	`Tremblaya princeps 6`	`tmRNA Website`
	`AZOA.SPEC.-1.`	`Azoarcus species BH72`	`tmRNA Website`
	`CHRO.VIOL.-1.`	`Chromobacterium violaceum strain ATCC 07461`	`tmRNA website`
	`CHRO.VIOL.-2.`	`Chromobacterium violaceum strain ATCC12472`	`AE016917`
	`NEIS.GONO.`	`Neisseria gonorrhoeae`	`U68080 GSP`
	`NEIS.LACT.`	`Neisseria lactamica`	`GSP`
	`NEIS.MENI.-1.`	`Neisseria meningitidis`	`AL162755`
	`NEIS.MENI.-2.`	`Neisseria meningitidis`	`AE002098`
	`NITR.MULT.`	`Nitrosospira multiformis`	`GSP`
	`UNCU.FAR7.`	`Uncultured bacterium farm7`	`AAFX01088509`
	`UNCU.POL1.PA.`	`Uncultured bacterium pollen1`	`CB818296`
	`UNCU.U02-.`	`Uncultured U02`	`tmRNA website`
	`NITR.EURO.`	`Nitrosomonas europaea`	`AL954747`
	`METH.GLYC.`	`Methylobacillus glycogenes`	`tmRNA website`
	`METH.FLAG.`	`Methylobacillus flagellatus`	`GSP`
	`NITR.CRYO.`	`Nitrosomonas cryotolerans`	`tmRNA website`
	`UNCU.U04-.PA.`	`Uncultured U04 (partial sequence)`	`tmRNA website`
	`UNCU.ZEB1.PA.`	`Uncultured bacterium zebu1`	`CB042349`
	`ALCA.FAEC.`	`Alcaligenes faecalis`	`tmRNA website`
	`BORD.AVIU.`	`Bordetella avium`	`GSP`
	`UNCU.FAR3.`	`Uncultured bacterium farm3`	`AAFX01035522`
	`BORD.PARA.`	`Bordetella parapertussis`	`GSP`
	`BORD.PERT.`	`Bordetella pertussis`	`GSP`
	`BORD.BRON.AM.`	`Bordetella bronchiseptica (ambiguous residues)`	`GSP`
	`ALCA.VISC.`	`Alcaligenes viscolactis strain S-2`	`AY911519`
	`UNCU.ROO1.PA.`	`Uncultured bacterium root1`	`CA305493`
	`UNCU.HUM2.PA.`	`Uncultured bacterium human2`	`AW835368`
	`UNCU.STR1.`	`Uncultured bacterium stronglyoides1`	`CZ539665`
	`UNCU.RIC2.`	`Uncultured bacterium rice2`	`AAAA02043629`
	`UNCU.AED1.`	`Uncultured bacterium aedes1`	`AAGE01398527`
	`POLA.SPEC.`	`Polaromonas species JS666`	`AAFQ02000000`
	`RUBR.GELA.`	`Rubrivivax gelatinosus strain PM1`	`AAEM01000001`
	`THIO.DENI.`	`Thiobacillus denitrificans`	`AAFH01000001`
	`COMA.TEST.`	`Comamonas testosteroni`	`tmRNA website`
	`HYDR.PALL.`	`Hydrogenophaga palleronii`	`tmRNA website`
	`VARI.PARA.`	`Variovorax paradoxus`	`tmRNA website`
	`BURK.PSEU.`	`Burkholderia pseudomallei`	`GSP`
	`BURK.MALL.`	`Burkholderia mallei strain ATCC 23344`	`GSP`
	`BURK.THAI.`	`Burkholderia thailandensis E264`	`GSP`
	`BURK.CENO.`	`Burkholderia cenocepacia strain J2315`	`GSP`
	`BURK.CEPA.-1.`	`Burkholderia cepacia strain R1808`	`GSP`
	`BURK.CEPA.-2.`	`Burkholderia cepacia strain R18194`	`GSP`
	`BURK.FUNG.`	`Burkholderia fungorum`	`GSP`
	`ALCA.EUTR.`	`Alcaligenes eutrophus`	`X51902`
	`RALS.EUTR.`	`Ralstonia eutropha`	`CP000090`
	`RALS.META.`	`Ralstonia metallidurans`	`GSP`
	`RALS.SOLA.`	`Ralstonia solanacearum`	`NC_003295 AL646061`
	`RALS.PICK.`	`Ralstonia pickettii`	`tmRNA website`

`Gammaproteobacteria`	`ACID.FERR.-1.`	`Acidithiobacillus ferroxidans strain ATCC 23270`	`GSP`
	`ACID.FERR.-2.`	`Acidithiobacillus ferroxidans`	`tmRNA website`
	`FRAN.TULA.`	`Francisella tularensis`	`GSP`
	`PROT.SAR1.-1.`	`Proteobacteria SAR-1`	`AACY01013710`
	`DICH.NODO.`	`Dichelobacter nodosus`	`U20246`
	`XYLE.FAST.-1.`	`Xylella fastidiosa strain 9a5c`	`AE004078`
	`XYLE.FAST.-2.`	`Xylella fastidiosa Dixon Strain`	`GSP`
	`XYLE.FAST.-3.`	`Xylella fastidiosa Ann-1 Strain`	`GSP`
	`XYLE.FAST.-4.`	`Xylella fastidiosa strain Temecula1 (Temecula1)`	`AE012561`
	`STEN.MALT.`	`Stenotrophomonas maltophilia`	`GSP`
	`XANT.CAMP.`	`Xanthomonas campestris`	`AE012247`
	`XANT.AXON.`	`Xanthomonas axonpodis`	`AE011783`
	`XANT.ORYZ.`	`Xanthomonas oryzae pv. oryzae KACC10331`	`AE013598`
	`UNCU.RIC4.`	`Uncultured bacterium rice4`	`AACV01028831`
	`NITR.OCEA.`	`Nitrosococcus oceani ATCC 19707`	`GSP`
	`UNCU.WHA1.`	`Uncultured bacterium whale1`	`AAFZ01002114`
	`LEGI.PNEU.`	`Legionella pneumophila`	`U68079`
	`BACT.SAR1.-1.PA.`	`Bacteria SAR-1`	`AACY01111840`
	`BACT.SAR1.-2.PA.`	`Bacteria SAR-1`	`AACY01029760`
	`SHEW.SAR2.-2.`	`Shewanella SAR-2`	`AACY01086943`
	`PROT.SAR1.-3.`	`Proteobacteria SAR-1`	`AACY01081395`
	`COXI.BURN.`	`Coxiella burnetii`	`GSP`
	`METH.CAPS.`	`Methylococcus capsulatus strain Bath`	`AE017282`
	`SHEW.SAR1.-2.`	`Shewanella SAR-1`	`AACY01087071`
	`UNCU.MAR1.`	`Uncultured marine gamma proteobacterium EBAC20E09`	`AY552545`
	`UNCU.U01A.`	`Uncultured U01a`	`tmRNA website`
	`UNCU.U01B.`	`Uncultured U01b`	`tmRNA website`
	`MICR.DEGR.`	`Microbulbifer degradans`	`GSP`
	`PSEU.AERU.`	`Pseudomonas aeruginosa`	`GSP`
	`AZOT.VINE.`	`Azotobacter vinelandii`	`GSP`
	`UNCU.BON1.PA.`	`Uncultured bacterium bone1`	`AAGA01012173`
	`PSEU.FLUO.-1.`	`Pseudomonas fluorescens Strain Pf0-1`	`GSP`
	`PSEU.FLUO.-2.`	`Pseudomonas fluorescens SBW25`	`GSP`
	`UNCU.HUM1.PA.`	`Uncultured bacterium human1`	`BE092250`
	`UNCU.CHI1.PA.`	`Uncultured bacterium chicken1`	`CL280628`
	`PSEU.FLUO.-3.`	`Pseudomonas fluorescens strain Pf-5`	`GSP`
	`PSEU.FLUO.-4.`	`Pseudomonas fluorescens strain ATCC 17400`	`AY911520`
	`PSEU.CHLO.`	`Pseudomonas chlororaphis strain 30-84`	`AY911521`
	`PSEU.PUTI.-2.`	`Pseudomonas putida strain ATCC 12633 (ATCC 12633)`	`AY911522`
	`PSEU.PUTI.-1.`	`Pseudomonas putida`	`GSP`
	`PSEU.SYRI.-1.`	`Pseudomonas syringae strain DC3000`	`GSP`
	`PSEU.SYRI.-2.`	`Pseudomonas syringae`	`GSP`
	`PSEU.SYRI.-3.`	`Pseudomonas syringae pathovar phaseolicola strain 1448A`	`GSP`
	`MORA.CATA.`	`Moraxella catarrhalis`	`AX067460`
	`ACIN.ADP1.`	`Acinetobacter ADP1`	`GSP`
	`ACIN.BAUM.PA.`	`Acinetobacter baumannii`	`AR319033`
	`UNCU.CRE1.`	`Uncultured bacterium c_remanei1`	`AAGD01019434`
	`UNCU.BON3.`	`Uncultured bacterium bone3`	`AAGA01018978`
	`PSYC.273-.`	`Psychrobacter 273-4`	`GSP`
	`PSYC.URAT.`	`Psychrobacter urativorans`	`AY846305`
	`CHRO.SALE.`	`Chromohalobacter salexigens strain DSM3043`	`GSP`
	`MARI.HYDR.`	`Marinobacter hydrocarbonoclasticus`	`U68077`
	`UNCU.FLA1.PA.`	`Uncultured bacterium flatworm1`	`BU276175`
	`GAMM.SAR1.`	`Gammaproteobacteria SAR-1`	`AACY01081759`
	`PROT.SAR1.-2.`	`Proteobacteria SAR-1`	`AACY01117420`
	`COLW.PSYC.`	`Colwellia psychrerythraea strain 34H`	`GSP`
	`PSEU.HALO.`	`Pseudoalteromonas haloplanktis`	`U68076`
	`UNCU.WW11.`	`Uncultured WW11`	`AF389985`
	`IDIO.LOIH.`	`Idiomarina loihiensis L2TR`	`AE017340`
	`PHOT.PHOS.`	`Photobacterium phosphoreum`	`AY040837`
	`PHOT.PROF.`	`Photobacterium profundum strain SS9`	`CR378665`
	`SHEW.PUTR.-1.`	`Shewanella putrefaciens`	`GSP`
	`SHEW.PUTR.-2.`	`Shewanella putrefaciens CN-32`	`GSP`
	`SHEW.SPEC.`	`Shewanella species PV-4`	`GSP`
	`SHEW.DENI.`	`Shewanella denitrificans OS-217`	`GSP`
	`SHEW.SAR1.-1.`	`Shewanella SAR-1`	`AACY01043347`
	`SHEW.SAR2.-1.`	`Shewanella SAR-2`	`AACY01092819`
	`VIBR.FISC.`	`Vibrio fischeri`	`GSP`
	`VIBR.CHOL.`	`Vibrio cholerae`	`U39068 U02372 GSP`
	`VIBR.PARA.`	`Vibrio parahaemolyticus RIMD 2210633`	`AP005057`
	`VIBR.VULN.`	`Vibrio vulnificus`	`AE016798 AP005333`
	`AERO.HYDR.-1.`	`Aeromonas hydrophila strain PPD134/91`	`AY442269`
	`AERO.HYDR.-2.`	`Aeromonas hydrophila strain ATCC 7966`	`GSP`
	`AERO.SALM.`	`Aeromonas salmonicida`	`U68075`
	`UNCU.VLW3.`	`Uncultured VLW3`	`AF389968`
	`UNCU.VLW4.`	`Uncultured VLW4`	`AF389969`
	`UNCU.VLS1.-3.`	`Uncultured VLS11`	`AF389970`
	`UNCU.RCA3.`	`Uncultured RCA3`	`AF389971`
	`UNCU.VLS1.-4.`	`Uncultured VLS13`	`AF389973`
	`UNCU.WW-9.`	`Uncultured WW9`	`AF389974`
	`UNCU.WW10.`	`Uncultured WW10`	`AF389975`
	`UNCU.VLW5.`	`Uncultured VLW5`	`AF389976`
	`UNCU.VLW6.`	`Uncultured VLW6`	`AF389977`
	`UNCU.RCA4.`	`Uncultured RCA4`	`AF389978`
	`UNCU.RCA7.`	`Uncultured RCA7`	`AF389981`
	`UNCU.RCA8.`	`Uncultured RCA8`	`AF389982`
	`UNCU.LEM1.`	`Uncultured LEM1`	`AF389983`
	`UNCU.LEM2.`	`Uncultured LEM2`	`AF389984`
	`WIGG.BREV.`	`Wigglesworthia brevipalpis`	`BA000021`
	`BLOC.FLOR.`	`Blochmannia floridanus`	`BX248583`
	`EWRI.AMYL.`	`Erwinia amylovora`	`GSP`
	`MANN.SUCC.`	`Mannheimia succiniciproducens MBEL55E`	`AE016827`
	`HAEM.DUCR.-2.`	`Haemophilus ducreyi strain NCTC 10945`	`AX048594`
	`HAEM.INFL.-2.`	`Haemophilus influenzae strain R2866`	`AADP01000001`
	`HAEM.INFL.-3.`	`Haemophilus influenzae strain R2846`	`AADO01000004`
	`HAEM.INFL.-4.`	`Haemophilus influenzae strain 86-028NP`	`CQ872938`
	`PAST.MULT.`	`Pasteurella multocida`	`NC_002663`
	`MANN.HAEM.`	`Mannheimia haemolytica`	`GSP`
	`HAEM.SOMN.`	`Haemophilus somnus`	`GSP`
	`HAEM.INFL.-1.`	`Haemophilus influenzae`	`U32753 U32808`
	`HAEM.DUCR.-1.`	`Haemophilus ducreyi`	`AE017151`
	`ACTI.PLEU.`	`Actinobacillus pleuropneumoniae`	`GSP`
	`ACTI.ACTI.`	`Actinobacillus actinomycetemcomitans`	`GSP`
	`BUCH.APHI.-1.`	`Buchnera aphicola strain Sg (Schizaphis graminum)`	`AE014094`
	`BUCH.APHI.-2.`	`Buchnera aphicola strain APS`	`AP001118`
	`BUCH.APHI.-3.`	`Buchnera aphidicola strain Bp (Baizongia pistaciae)`	`AE014016`
	`PHOT.ASYM.`	`Photorhabdus asymbiotica`	`GSP`
	`PHOT.LUMI.`	`Photorhabdus luminescens`	`BX571870`
	`SHIG.FLEX.`	`Shigella flexneri`	`GSP`
	`SHIG.DYSE.`	`Shigella dysenteriae strain M131649`	`GSP`
	`ESCH.COLI.-1.`	`Escherichia coli K12`	`D12501 X16382`
	`ESCH.COLI.-2.`	`Escherichia coli strain CFT073`	`AE014075`
	`ESCH.COLI.-3.`	`Escherichia coli O157:H7 strains EDL933 and RIMD050995`	`AE005174 BA000007`
	`ENTE.CLOA.`	`Enterobacter cloacae`	`AY491434`
	`ENTE.AERO.`	`Enterobacter aerogenes strain ATCC 13048`	`AY491435`
	`PROV.RETT.`	`Providencia rettgeri`	`AF440353`
	`ENTE.SAKA.`	`Enterobacter sakazakii`	`tmRNA Website`
	`SERR.MARC.-1.`	`Serratia marcescens strain BH`	`tmRNA Website`
	`SERR.MARC.-2.`	`Serratia marcescens strain Db11`	`GSP`
	`PANT.STEW.`	`Pantoea stewartii strain DC283`	`GSP`
	`PROT.VULG.`	`Proteus vulgaris strain ATCC 13315`	`AY846304`
	`KLEB.AERO.`	`Klebsiella aerogenes NTCT 9528`	`AX048500`
	`KLEB.PNEU.`	`Klebsiella pneumoniae`	`GSP`
	`ERWI.CARO.`	`Erwinia carotovora subsp. atroseptica`	`GSP`
	`ERWI.CHRY.`	`Erwinia chrysanthemi`	`GSP`
	`SALM.PARA.`	`Salmonella paratyphi strains A and B`	`GSP GSP`
	`SALM.BONG.`	`Salmonella bongori`	`GSP`
	`SALM.ENTE.-3.`	`Salmonella enterica subsp. Diarizonae`	`GSP`
	`SALM.TYPH.-1.`	`Salmonella typhimurium`	`GSP`
	`SALM.TYPH.-2.`	`Salmonella typhi`	`GSP`
	`SALM.ENTE.-1.`	`Salmonella enterica serovars Enteritidis and Dublin`	`GSP`
	`SALM.ENTE.-4.`	`Salmonella enterica serovar Choleraesuis str. SC-B67`	`AE017220`
	`SALM.ENTE.-2.`	`Salmonella enterica subsp. Arizonae`	`AF389960`
	`CITR.RODE.`	`Citrobacter rodentium`	`GSP`
	`UNCU.RCA1.`	`Uncultured RCA1`	`AF389942`
	`UNCU.VLS1.-1.`	`Uncultured VLS1`	`AF389943`
	`UNCU.VLS3.`	`Uncultured VLS3`	`AF389945`
	`UNCU.VLS4.`	`Uncultured VLS4`	`AF389946`
	`UNCU.WW-1.`	`Uncultured WW1`	`AF389947`
	`UNCU.RCA2.`	`Uncultured RCA2`	`AF389948`
	`UNCU.WW-2.`	`Uncultured WW2`	`AF389949`
	`UNCU.WW-3.`	`Uncultured WW3`	`AF389950`
	`UNCU.QL-1.`	`Uncultured QL1`	`AF389951`
	`UNCU.WW-4.`	`Uncultured WW4`	`AF389952`
	`UNCU.VLS1.-2.PA.`	`Uncultured VLS10 (partial sequence)`	`AF389967`
	`UNCU.VLS5.`	`Uncultured VLS5`	`AF389953`
	`UNCU.FS-1.`	`Uncultured FS1`	`AF389954`
	`UNCU.VLS6.`	`Uncultured VLS6`	`AF389955`
	`UNCU.FS-2.`	`Uncultured FS2`	`AF389956`
	`UNCU.WW-5.`	`Uncultured WW5`	`AF389957`
	`UNCU.WW-6.`	`Uncultured WW6`	`AF389958`
	`UNCU.VLW1.`	`Uncultured VLW1`	`AF389959`
	`UNCU.VLS7.`	`Uncultured VLS7`	`AF389961`
	`UNCU.VLS8.`	`Uncultured VLS8`	`AF389962`
	`UNCU.VLS9.`	`Uncultured VLS9`	`AF389963`
	`UNCU.VLW2.`	`Uncultured VLW2`	`AF389966`
	`UNCU.WW-7.`	`Uncultured WW7`	`AF389964`
	`UNCU.WW-8.`	`Uncultured WW8`	`AF389965`
	`YERS.ENTE.`	`Yersinia entericolitica`	`GSP`
	`YERS.PEST.`	`Yersinia pestis`	`GSP`
	`UNCU.WEE1.PA.`	`Uncultured bacterium weevil1`	`CN612381`

`Deltaproteobacteria`	`LAWS.INTR.`	`Lawsonia intracellularis`	`GSP`
	`DESU.VULG.`	`Desulfovibrio vulgaris strain Hildenborough`	`GSP`
	`DESU.DESU.-2.`	`Desulfovibrio desulfuricans strain G20`	`AABN02000009 GSP`
	`DESU.DESU.-1.`	`Desulfovibrio desulfuricans`	`U68081`
	`DESU.PSYC.`	`Desulfotalea psychrophila strain LSv54`	`CR522870`
	`UNCU.CION.`	`Uncultured bacterium ciona1`	`AACT01039607`
	`BDEL.BACT.`	`Bdellovibrio bacteriovorus HD100`	`ACBX842656`
	`UNCU.FAR8.`	`Uncultured bacterium farm8`	`AAFX01004374`
	`DESU.ACET.`	`Desulfuromonas acetoxidans`	`GSP`
	`GEOB.SULF.`	`Geobacter sulfurreducens strain PCA`	`GSP`
	`GEOB.META.`	`Geobacter metallireducens`	`GSP`
	`BACT.MARI.`	`Bacteriovorax marinus`	`GSP`
	`MYXO.XANT.`	`Myxococcus xanthus strain DK 1622`	`GSP`

`Epsilonproteobacteria`	`WOLI.SUCC.`	`Wolinella succinogenes`	`BX571661`
	`CAMP.LARI.`	`Campylobacter lari RM2100`	`AAFK01000004`
	`CAMP.FETU.-2.`	`Campylobacter fetus strain 23D`	`AY2112269`
	`CAMP.FETU.-1.`	`Campylobacter fetus`	`AX048586`
	`CAMP.COLI.-1.`	`Campylobacter coli strain RM2228`	`AAFL01000002`
	`CAMP.COLI.-2.`	`Campylobacter coli strain BM2509`	`AX048589`
	`CAMP.JEJU.`	`Campylobacter jejuni`	`GSP`
	`HELI.PYLO.`	`Helicobacter pylori`	`AE000590`
	`HELI.HEPA.`	`Helicobacter hepaticus`	`AE017149`
	`HELI.MUST.`	`Helicobacter mustelae`	`GSP`

`Fusobacteria`	`FUSO.NUCL.-1.`	`Fusobacterium nucleatum ATCC 25586`	`GSP`
	`FUSO.NUCL.-2.`	`Fusobacterium nucleatum`	`GSP`
	`FUSO.NUCL.-3.`	`Fusobacterium nucleatum ATCC 49256`	`GSP`

`Dictyoglomi`	`DICT.THER.`	`Dictyoglomus thermophilum strain DSM 3960`	`GSP`

`Actinomycetes`	`ACTI.NAES.`	`Actinomyces naeslundii strain MG1`	`GSP`
	`UNCU.HOO2.`	`Uncultured bacterium hookworm2`	`BM130131`
	`BIFI.LONG.`	`Bifidobacterium longum`	`AABM00000000`
	`ARTH.SPEC.`	`Arthrobacter species strain FB24`	`GSP`
	`RUBR.XYLA.`	`Rubrobacter xylanophilus`	`GSP`
	`PROP.ACNE.-1.`	`Propionibacterium acnes strain KPA171202`	`AE017283`
	`PROP.ACNE.-2.`	`Propionibacterium acnes`	`CQ363774`
	`STRE.AURE.`	`Streptomyces aureofaciens`	`AY616521`
	`STRE.COEL.`	`Streptomyces coelicolor`	`AL939114`
	`STRE.AVER.`	`Streptomyces avermitilis`	`BA000030`
	`STRE.COLL.`	`Streptomyces collinus`	`AY485228`
	`CLAV.MICH.`	`Clavibacter michiganensis`	`GSP`
	`BREV.LINE.`	`Brevibacterium linens`	`GSP`
	`THER.FUSC.`	`Thermobifida fusca`	`GSP`
	`TROP.WHIP.`	`Tropheryma whipplei`	`GSP`
	`KINE.RADI.`	`Kineococcus radiotolerans`	`GSP`
	`FRAN.SPEC.-1.`	`Frankia sp. CcI3`	`GSP`
	`FRAN.SPEC.-2.`	`Frankia sp. EAN1pec`	`GSP`
	`LEIF.XYLI.`	`Leifsonia xyli subsp. xyli strain CTCB07`	`AE016822`
	`GORD.RUBR.`	`Gordonia rubripertincta`	`AY911523`
	`NOCA.FARC.`	`Nocardia farcinica`	`AP006618`
	`NOCA.ASTE.-1.`	`Nocardia asteroides 1`	`AX048666`
	`NOCA.ASTE.-2.`	`Nocardia asteroides 2`	`AX048665`
	`RHOD.EQUI.`	`Rhodococcus equi strain X`	`AY846303`
	`MYCO.AVIU.-2.`	`Mycobacterium avium strain k10`	`AE017238`
	`MYCO.SCRO.`	`Mycobacterium scrofulaceum`	`AX048664`
	`MYCO.INTR.`	`Mycobacterium intracellulare`	`AX048662`
	`MYCO.XENO.`	`Mycobacterium xenopi`	`AX048660`
	`MYCO.FLAV.`	`Mycobacterium flavescens`	`AX048652`
	`MYCO.MALM.`	`Mycobacterium malmoense`	`AX048650`
	`MYCO.SZUL.`	`Mycobacterium szulgai`	`AX048648`
	`MYCO.CHEL.`	`Mycobacterium chelonae`	`AX048646`
	`MYCO.KANS.`	`Mycobacterium kansasii`	`AX048644`
	`MYCO.GORD.`	`Mycobacterium gordonae`	`AX048642`
	`MYCO.MICR.-2.`	`Mycobacterium microti`	`AX048656`
	`MYCO.TUBE.-2.`	`Mycobacterium tuberculosis strain 210`	`GSP`
	`MYCO.MARI.-2.`	`Mycobacterium marinum`	`AX048654`
	`MYCO.LEPR.`	`Mycobacterium leprae`	`Z98271`
	`MYCO.AVIU.-1.`	`Mycobacterium avium strain 104`	`GSP`
	`MYCO.TUBE.-1.`	`Mycobacterium tuberculosis`	`X60301`
	`MYCO.BOVI.`	`Mycobacterium bovis`	`GSP`
	`MYCO.MARI.-1.`	`Mycobacterium marinum`	`GSP`
	`MYCO.SMEG.`	`Mycobacterium smegmatis strain MC2`	`GSP`
	`CORY.DIPH.`	`Corynebacterium diphtheriae`	`GSP`
	`CORY.GLUT.`	`Corynebacterium glutamicum`	`BA000036`
	`CORY.EFFI.`	`Corynebacterium efficiens`	`BA000035`

`Firmicutes/Bacilli`	`PAEN.LARV.`	`Paenibacillus larvae`	`GSP`
	`PAEN.MACE.`	`Paenibacillus macerans strain NRS277`	`AY911524`
	`BACI.THUR.`	`Bacillus thuringiensis serovar konkukian strain 97-27`	`AE017355`
	`BACI.MEGA.`	`Bacillus megaterium`	`AF019911`
	`BACI.HALO.`	`Bacillus halodurans`	`BA000004`
	`BACI.CLAU.`	`Bacillus clausii strain KSM-K16`	`AP006627`
	`BACI.SUBT.`	`Bacillus subtilis`	`D25231`
	`BACI.LICH.`	`Bacillus licheniformis strain ATCC 14580`	`CP000002`
	`BACI.STEA.`	`Bacillus stearothermophilus`	`GSP`
	`GEOB.KAUS.`	`Geobacillus kaustophilus HTA426`	`BA000043`
	`OCEA.IHEY.`	`Oceanobacillus iheyensis`	`BA000028`
	`EXIG.SPEC.`	`Exiguobacterium strain 255-15`	`GSP`
	`STAP.SAPR.`	`Staphylococcus saprophyticus`	`AF375585`
	`STAP.EPID.`	`Staphylococcus epidermidis`	`AF269456`
	`STAP.AURE.-1.`	`Staphylococcus aureus strains COL and NCTC8325`	`GSP`
	`STAP.AURE.-2.`	`Staphylococcus aureus strain EMRSA-16`	`GSP`
	`STAP.AURE.-3.`	`Staphylococcus aureus strain MSSA 476`	`GSP`
	`STAP.AURE.-4.`	`Staphylococcus aureus strains Mu50 and N315`	`BA000017 BA000018`
	`STAP.AURE.-5.`	`Staphylococcus aureus sbsp. aureus MW2`	`BA000033`
	`STAP.XYLO.`	`Staphylococcus xylosus`	`AF375587`
	`BACI.ANTH.`	`Bacillus anthracis strain Ames and A2012`	`GSP GSP`
	`BACI.CERE.`	`Bacillus cereus strain 10987`	`GSP`
	`LIST.INNO.-1.`	`Listeria innocua`	`AL596172`
	`LIST.INNO.-2.`	`Listeria innocua strain ATCC 12210 (ATCC 12210)`	`AX048603`
	`LIST.MONO.`	`Listeria monocytogenes`	`AF375584`
	`LIST.GRAY.-1.`	`Listeria grayi strain NCTC 10812`	`AF440349`
	`LIST.GRAY.-2.`	`Listeria grayi strain NCTC 10815`	`AF440336`
	`LIST.IVAN.`	`Listeria ivanovii`	`AF440342`
	`LIST.SEEL.`	`Listeria seeligeri`	`AF440350`
	`LIST.WELS.`	`Listeria welshimeri`	`AF440351`
	`LEUC.MESE.`	`Leuconostoc mesenteroides`	`AF375571`
	`LEUC.PSEU.`	`Leuconostoc pseudomesenteroides`	`AF375570`
	`LEUC.LACT.`	`Leuconostoc lactis`	`AF375569`
	`LACT.DELB.-1.`	`Lactobacillus delbrueckii subsp. lactis strain NCTC 662`	`AF440335`
	`LACT.DELB.-2.`	`Lactobacillus delbrueckii strain ATCC BAA-365`	`GSP`
	`LACT.GASS.`	`Lactobacillus gasseri`	`GSP`
	`LACT.JOHN.`	`Lactobacillus johnsonii`	`AE017202`
	`LACT.CASE.`	`Lactobacillus casei`	`GSP`
	`LACT.ACID.`	`Lactobacillus acidophilus strain NCFM`	`CP000033`
	`LACT.BREV.`	`Lactobacillus brevis`	`AL935259`
	`LACT.SAKE.`	`Lactobacillus sakei`	`AF400065`
	`LACT.HELV.`	`Lactobacillus helveticus`	`AF375575`
	`LACT.GALL.`	`Lactobacillus gallinarum`	`AF375577`
	`LACT.PLAN.-1.`	`Lactobacillus plantarum strain CNRZ211`	`AF375576`
	`LACT.PLAN.-3.`	`Lactobacillus plantarum strain WCSF1`	`AL935259`
	`CARN.PISC.PA.`	`Carnobacterium piscicola (Partial Sequence)`	`AF275938`
	`ENTE.FAEC.-1.`	`Enterococcus faecalis strain V583`	`GSP`
	`ENTE.FAEC.-2.`	`Enterococcus faecium`	`AF375581 GSP`
	`ENTE.DURA.`	`Enterococcus durans`	`AF375582`
	`OENO.OENI.`	`Oenococcus oeni`	`GSP`
	`LACT.LACT.-1.`	`Lactococcus lactis subsp. lactis strain NCDO2118`	`AF375552`
	`LACT.LACT.-2.`	`Lactococcus lactis subsp. lactis bv. diacetylactis strain IL1403`	`AF375553`
	`LACT.LACT.-3.`	`Lactococcus lactis subsp. cremoris strain IL582`	`AF375556`
	`LACT.LACT.-4.`	`Lactococcus lactis subsp. lactis strain IL2961`	`AF375554`
	`LACT.GARV.`	`Lactococcus garvieae`	`AF375579`
	`LACT.PLAN.-2.`	`Lactococcus plantarum strain CNRZ1322`	`AF375567`
	`PEDI.PENT.`	`Pediococcus pentosaceus`	`GSP`
	`LACT.RAFF.`	`Lactococcus raffinolactis`	`AF375578`
	`STRE.AGAL.-1.`	`Streptococcus agalactiae strain A909`	`GSP`
	`STRE.AGAL.-2.`	`Streptococcus agalactiae strain NEM316`	`AL766848`
	`STRE.SOBR.`	`Streptococcus sobrinus strain 6715`	`GSP`
	`STRE.ZOOE.`	`Streptococcus zooepidemicus`	`GSP`
	`STRE.EQUI.`	`Streptococcus equi`	`GSP`
	`STRE.UBER.`	`Streptococcus uberis`	`GSP`
	`STRE.PYOG.`	`Streptococcus pyogenes`	`GSP`
	`STRE.SUIS.-1.PA.`	`Streptococcus suis (partial sequence)`	`GSP`
	`STRE.SUIS.-2.`	`Streptococcus suis strain 89/1591`	`AAFA01000032`
	`STRE.THER.-3.`	`Streptococcus thermophilus strains CNRZ1066 and LMG 18311`	`CP000024`
	`STRE.THER.-1.`	`Streptococcus thermophilus strain CNRZ1358`	`AF375568`
	`STRE.THER.-2.`	`Streptococcus thermophilus strain LMD-9`	`GSP`
	`STRE.GORD.`	`Streptococcus gordonii strain Challis NCTC7868`	`GSP`
	`STRE.MITI.`	`Streptococcus mitis strain NCTC 12261`	`GSP`
	`STRE.PNEU.`	`Streptococcus pneumoniae strain 670`	`GSP`
	`STRE.MUTA.`	`Streptococcus mutans strain UA159`	`GSP`

`Firmicutes/Clostridia`	`DESU.HAFN.`	`Desulfitobacterium hafniense`	`GSP`
	`HELI.MOBI.`	`Heliobacillus mobilis`	`AY040838`
	`CLOS.THER.`	`Clostridium thermocellum`	`AABG00000000`
	`THER.TENG.`	`Thermoanaerobacter tengcongensis`	`AE013063`
	`COPR.PROT.`	`Coprothermobacter proteolyticus strain DSM 9218`	`GSP`
	`MOOR.THER.`	`Moorella thermoacetica`	`GSP`
	`CLOS.PERF.-1.`	`Clostridium perfringens strain ATCC13124`	`GSP`
	`CLOS.PERF.-2.`	`Clostridium perfringens strain 13`	`BA000016`
	`CLOS.PERF.-3.`	`Clostridium perfringens`	`AX048592`
	`CLOS.BOTU.`	`Clostridium botulinum`	`GSP`
	`CLOS.TETA.`	`Clostridium tetani`	`tmRNA Website`
	`CLOS.DIFF.`	`Clostridium difficile`	`GSP`
	`CLOS.ACET.`	`Clostridium acetobutylicum`	`AE007587`
	`RUMI.ALBU.`	`Ruminococcus albus strain 8`	`GSP`
	`CARB.HYDR.`	`Carboxydothermus hydrogenoformans strain Z-2901`	`GSP`

`Firmitutes/Mollicutes`	`MYCO.MICR.-1.`	`Mycoplasma mycoides`	`BX842642`
	`MESO.FLOR.`	`Mesoplasma florum`	`AE017263`
	`MYCO.CAPR.`	`Mycoplasma capricolum`	`D13067`
	`UREA.UREA.`	`Ureaplasma urealyticum`	`AE002154`
	`SPIR.KUNK.`	`Spiroplasma kunkelii`	`GSP`
	`MYCO.GENI.-1.`	`Mycoplasma genitalium`	`U39714`
	`MYCO.GENI.-2.`	`Mycoplasma genitalium`	`AY911530`
	`MYCO.MYCO.`	`Mycoplasma mycoides`	`BX842642`
	`MYCO.MOBI.`	`Mycoplasma mobile`	`AE017308`
	`MYCO.PENE.`	`Mycoplasma penetrans strain HF-2`	`BA000026`
	`MYCO.ARTH.`	`Mycoplasma arthridis`	`GSP`
	`UNCU.TOX1.PA.`	`Uncultured bacterium Toxoplasma2`	`AF092791`
	`UNCU.TOX2.PA.`	`Uncultured bacterium Toxoplasma1`	`AF092786`
	`UNCU.HUM4.PA.`	`Uncultured bacterium human4`	`AF120328`
	`UNCU.HUM5.PA.`	`Uncultured bacterium human5`	`CB113832`
	`UNCU.HUM6.PA.`	`Uncultured bacterium human6`	`BF990150`
	`MYCO.PNEU.`	`Mycoplasma pneumoniae`	`AE000035`
	`MYCO.HYOP.`	`Mycoplasma hyopneumoniae strain 232`	`AE017332`
	`MYCO.GALL.`	`Mycoplasma gallisepticum`	`AE016968`
	`MYCO.PULM.`	`Mycoplasma pulmonis`	`AL445565`
	`PHYT.ASTE.`	`Phytoplasma asteris (Onion yellows phytoplasma OY-M)`	`AP006628`

species listed in alphabetical order...

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